Load pipeline data to db
A script for loading pipeline data to database
Usage
load_pipeline_data.py [-h] -p PIPELINE_DATA [-u] -d DBCONFIG_PATH -s SLACK_CONFIG
Parameters
-h /--help show this help message and exit
-p /--pipeline_data Pipeline data json file
-u /--update Update existing platform data, default: False
-d /--dbconfig_path Database configuration json file
-s /--slack_config Slack configuration json file
Pipeline data json file
{
"pipeline_name":"demultiplexing_fastq",
"pipeline_db":"sqlite:////data/bcl2fastq.db",
"pipeline_init_conf":{"input_dir":"data/seqrun_dir/", "output_dir":"data"},
"pipeline_run_conf":{"output_dir":"/path/output_dir2"},
}